SNP Profiles of SGU 54   View Data

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_Input profile
GGTTCCGTCTACCGAGCTAAGGAGCCCT
1._GC-01-013-1-13
GGTTACGTCTAACCAGTTAAGGAGCCCT
2._GC-01-013-1-13
GGTTACGTCTAACCAGTTAAGGAGCCCT
3._GC-01-013-1-13
GGTTACGTCTAACCAGTTAAGGAGCCCT
4._GC-01-013-1-13
GGTTACGTCTAACCAGTTAAGGAGCCCT
5._GC-01-013-1-13
GGTTACGTCTAACCAGTTAAGGAGCCCT
6._GC-01-013-1-13
GGTTACGTCTAACCAGTTAAGGAGCCCT
7._GC-01-013-1-13
GGTTACGTCTAACCAGTTAAGGAGCCCT
8._GC-01-013-1-13
GGTTACGTCTAACCAGTTAAGGAGCCCT
9._GC-01-013-1-13
GGTTACGTCTAACCAGTTAAGGAGCCCT
10._GC-01-013-1-13
GGTTACGTCTAACCAGTTAAGGAGCCCT
11._GC-01-013-1-13
GGTTACGTCTAACCAGTTAAGGAGCCCT
12._GC-01-013-1-13
GGTTACGTCTAACCAGTTAAGGAGCCCT
13._GC-01-013-1-13
GGTTACGTCTAACCAGTTAAGGAGCCCT
14._GC-01-013-1-13
GGTTACGTCTAACCAGTTAAGGAGCCCT
15._GC-01-013-1-13
GGTTACGTCTAACCAGTTAAGGAGCCCT
16._GC-01-013-1-13
GGTTACGTCTAACCAGTTAAGGAGCCCT
17._SGU_54
GGTTACGTCTAACCAGTTAAGGAGCCCT
18._SGU_54
GGTTACGTCTAACCAGTTAAGGAGCCCT
19._SGU_54
GGTTACGTCTAACCAGTTAAGGAGCCCT
20._SGU_54
GGTTACGTCTAACCAGTTAAGGAGCCCT
21._SGU_54
GGTTACGTCTAACCAGTTAAGGAGCCCT
22._SGU_54
GGTTACGTCTAACCAGTTAAGGAGCCCT
23._SGU_54
GGTTACGTCTAACCAGTTAAGGAGCCCT
24._SGU_54
GGTTACGTCTAACCAGTTAAGGAGCCCT
25._SGU_54
GGTTACGTCTAACCAGTTAAGGAGCCCT
26._SGU_54
GGTTACGTCTAACCAGTTAAGGAGCCCT
27._SGU_54
GGTTACGTCTAACCAGTTAAGGAGCCCT
28._SGU_54
GGTTACGTCTAACCAGTTAAGGAGCCCT
29._SGU_54
GGTTACGTCTAACCAGTTAAGGAGCCCT
30._SGU_54
GGTTACGTCTAACCAGTTAAGGAGCCCT
31._SGU_54
GGTTACGTCTAACCAGTTAAGGAGCCCT
32._SGU_54
GGTTACGTCTAACCAGTTAAGGAGCCCT
 1516171819202122232425262728
_Input profile
TTCCACTTAGGTGGCCTTGGAATTAGCC
1._GC-01-013-1-13
GTCCACCTAGGGCGCTCTGGAATTAACT
2._GC-01-013-1-13
GTCCACCTAGGGCGCTCTGGAATTAACT
3._GC-01-013-1-13
GTCCACCTAGGGCGCTCTGGAATTAACT
4._GC-01-013-1-13
GTCCACCTAGGGCGCTCTGGAATTAACT
5._GC-01-013-1-13
GTCCACCTAGGGCGCTCTGGAATTAACT
6._GC-01-013-1-13
GTCCACCTAGGGCGCTCTGGAATTAACT
7._GC-01-013-1-13
GTCCACCTAGGGCGCTCTGGAATTAACT
8._GC-01-013-1-13
GTCCACCTAGGGCGCTCTGGAATTAACT
9._GC-01-013-1-13
GTCCACCTAGGGCGCTCTGGAATTAACT
10._GC-01-013-1-13
GTCCACCTAGGGCGCTCTGGAATTAACT
11._GC-01-013-1-13
GTCCACCTAGGGCGCTCTGGAATTAACT
12._GC-01-013-1-13
GTCCACCTAGGGCGCTCTGGAATTAACT
13._GC-01-013-1-13
GTCCACCTAGGGCGCTCTGGAATTAACT
14._GC-01-013-1-13
GTCCACCTAGGGCGCTCTGGAATTAACT
15._GC-01-013-1-13
GTCCACCTAGGGCGCTCTGGAATTAACT
16._GC-01-013-1-13
GTCCACCTAGGGCGCTCTGGAATTAACT
17._SGU_54
GTCCACCTAGGGCGCTCTGGAATTAACT
18._SGU_54
GTCCACCTAGGGCGCTCTGGAATTAACT
19._SGU_54
GTCCACCTAGGGCGCTCTGGAATTAACT
20._SGU_54
GTCCACCTAGGGCGCTCTGGAATTAACT
21._SGU_54
GTCCACCTAGGGCGCTCTGGAATTAACT
22._SGU_54
GTCCACCTAGGGCGCTCTGGAATTAACT
23._SGU_54
GTCCACCTAGGGCGCTCTGGAATTAACT
24._SGU_54
GTCCACCTAGGGCGCTCTGGAATTAACT
25._SGU_54
GTCCACCTAGGGCGCTCTGGAATTAACT
26._SGU_54
GTCCACCTAGGGCGCTCTGGAATTAACT
27._SGU_54
GTCCACCTAGGGCGCTCTGGAATTAACT
28._SGU_54
GTCCACCTAGGGCGCTCTGGAATTAACT
29._SGU_54
GTCCACCTAGGGCGCTCTGGAATTAACT
30._SGU_54
GTCCACCTAGGGCGCTCTGGAATTAACT
31._SGU_54
GTCCACCTAGGGCGCTCTGGAATTAACT
32._SGU_54
GTCCACCTAGGGCGCTCTGGAATTAACT
 293031323334353637383940  
_Input profile
AAAATTCTGTCCAATTCTCGAACTX_XX_X
1._GC-01-013-1-13
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
2._GC-01-013-1-13
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
3._GC-01-013-1-13
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
4._GC-01-013-1-13
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
5._GC-01-013-1-13
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
6._GC-01-013-1-13
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
7._GC-01-013-1-13
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
8._GC-01-013-1-13
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
9._GC-01-013-1-13
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
10._GC-01-013-1-13
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
11._GC-01-013-1-13
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
12._GC-01-013-1-13
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
13._GC-01-013-1-13
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
14._GC-01-013-1-13
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
15._GC-01-013-1-13
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
16._GC-01-013-1-13
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
17._SGU_54
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
18._SGU_54
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
19._SGU_54
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
20._SGU_54
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
21._SGU_54
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
22._SGU_54
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
23._SGU_54
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
24._SGU_54
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
25._SGU_54
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
26._SGU_54
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
27._SGU_54
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
28._SGU_54
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
29._SGU_54
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
30._SGU_54
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
31._SGU_54
AGAACTCCTTCTACTTCTGGAGCTX_XX_X
32._SGU_54
AGAACTCCTTCTACTTCTGGAGCTX_XX_X

Input profile: SGU_54

 
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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

1._SGU_54 GC-01-013-1-13

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

2._SGU_54 GC-01-013-1-13

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

3._SGU_54 GC-01-013-1-13

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16 > FP4
 Mars, 2018

4._SGU_54 GC-01-013-1-13

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

5._SGU_54 GC-01-013-1-13

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

6._SGU_54 GC-01-013-1-13

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

7._SGU_54 GC-01-013-1-13

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

8._SGU_54 GC-01-013-1-13

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

9._SGU_54 GC-01-013-1-13

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

10._SGU_54 GC-01-013-1-13

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

11._SGU_54 GC-01-013-1-13

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

12._SGU_54 GC-01-013-1-13

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

13._SGU_54 GC-01-013-1-13

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

14._SGU_54 GC-01-013-1-13

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

15._SGU_54 GC-01-013-1-13

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

16._SGU_54 GC-01-013-1-13

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

17._SGU_54

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1110 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

18._SGU_54

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1110 4 > FP
 Dapeng Zhang, 2016

19._SGU_54

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1110 16 > F
 Dapeng Zhang, 2016

20._SGU_54

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1110 14 > F
 Dapeng Zhang, 2016

21._SGU_54

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1110 14 > F
 Dapeng Zhang, 2016

22._SGU_54

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1110 13
 Dapeng Zhang, 2016

23._SGU_54

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1110 12
 Dapeng Zhang, 2016

24._SGU_54

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1110 11
 Dapeng Zhang, 2016

25._SGU_54

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1110 10
 Dapeng Zhang, 2016

26._SGU_54

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1110 9
 Dapeng Zhang, 2016

27._SGU_54

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1110 8
 Dapeng Zhang, 2016

28._SGU_54

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1110 7
 Dapeng Zhang, 2016

29._SGU_54

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1110 6
 Dapeng Zhang, 2016

30._SGU_54

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1110 5
 Dapeng Zhang, 2016

31._SGU_54

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1110 3
 Dapeng Zhang, 2016

32._SGU_54

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1110 2
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP560
16TcSNP577 17TcSNP591 18TcSNP619 19TcSNP645 20TcSNP723
21TcSNP872 22TcSNP891 23TcSNP917 24TcSNP929 25TcSNP953
26TcSNP994 27TcSNP998 28TcSNP1060 29TcSNP1062 30TcSNP1075
31TcSNP1144 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484 40TcSNP1520